Research output per year
Research output per year
Personal profile
Research interests
Dr. Blake Hovde joined LANL as a postdoc in 2015, bringing expertise in genome editing tools and algal genomics. Blake worked on algal biofuels related work during his postdoc and has since focused on bioinformatic tool development and the realm of digital biosecurity. Blake also co-manages the Applied Genomics Lab.
Research interest:
- Genomics and Transcriptomics
- Antibiotics and other natural products discovery
- Directed Evolution
- Digital Biosecurity
- Practical bioinformatics tools
- Biological sequence databases
- Genome engineering tools
Education/Academic qualification
Medicine (M.D.), PHD, University of Washington
Award Date: Dec 12 2014
Chinese Language & Literature, BA, Pacific Lutheran University
Award Date: May 1 2008
Biology, BS, Pacific Lutheran University
Award Date: May 1 2008
Fingerprint
Dive into the research topics where Blake Hovde, is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Research output
- 31 Article
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Global characterization of biosynthetic gene clusters in non-model eukaryotes using domain architectures
Kwon, T. & Hovde, B. T., Dec 2024, In: Scientific Reports. 14, 1, 1534.Research output: Contribution to journal › Article › peer-review
Open Access -
The telomere-to-telomere, gapless, phased diploid genome and methylome of the green alga Scenedesmus obliquus UTEX 3031 reveals significant heterozygosity and genetic divergence of the haplotypes
Biondi, T. C., Kruse, C. P. S., Koehler, S. I., Kwon, T., Davis, A. K., Eng, W., Kunde, Y., Gleasner, C. D., You Mak, K. T., Polle, J., Hovde, B. T., Hanschen, E. R. & Starkenburg, S. R., Apr 2024, In: Algal Research. 79, 103431.Research output: Contribution to journal › Article › peer-review
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Addressing the pervasive scarcity of structural annotation in eukaryotic algae
Kwon, T., Hanschen, E. R. & Hovde, B. T., Dec 2023, In: Scientific Reports. 13, 1, 1687.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
CRISPR/Cas9 Directed Reprogramming of iPSC for Accelerated Motor Neuron Differentiation Leads to Dysregulation of Neuronal Fate Patterning and Function
Davis-Anderson, K., Micheva-Viteva, S., Solomon, E., Hovde, B., Cirigliano, E., Harris, J., Twary, S. & Iyer, R., Nov 10 2023, In: International Journal of Molecular Sciences. 24, 22, 16161.Research output: Contribution to journal › Article › peer-review
Open Access -
Development of a field-deployable qPCR assay for real-time pest monitoring in algal cultivation systems
Sanchez, M. R., Denning, E., Biondi, T. C., Hovde, B., Eacker, S., Getto, S., Kaur, H., Jebali, A., Echenique-Subiabre, I., Green, M., Gerber, J., Auch, B., Holguin, F. O., Liachko, I., Martinez, H., Balleza, M., Nalley, J., O'Kelly, C., Shurin, J. B., Corcoran, A. A., & 1 others, Jul 2023, In: Algal Research. 74, 103194.Research output: Contribution to journal › Article › peer-review
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Oblique Plane Cytometry for Rapid, 3D Visualization of Cells in Flow
Hovde, B., Werner, J. H., Ryan, D. P. & Morales, D. P.
10/1/22 → 09/28/25
Project: Other
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Tool Development Development of AIMBOTS (Automated Iterative Multi-BLAST for Obfuscated Target Sequences)
Hovde, B. & Biondi, T. C.
12/5/22 → 09/24/23
Project: Other
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Measuring Network-Based and Physical Vulnerabilities of Complex Bionetworks
Hovde, B., Stella, O. R. & Zeigler, Z. D.
10/13/21 → 06/30/22
Project: Other
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HEROS- Human Exposure of Radiation using Organ Systems
Brown, M. J., Brambilla, S., Dichosa, A. E. K., Ganguly, K., Hovde, B., Jun, B. H., Harris, J. F., Bene, C. B., Herskowitz, L., Robinson, J., Shusteff, M., Snijders, A., Vaughan, S., Akh, L. A., Conry, P. T., Davis-Anderson, K. L., Goodman, J. L., Goorley, J. T., Greer, S. M., Ishak, M. O., Klumpp, J. A., Lenz, K. D., Livshits, M. Y., McClanahan, T. C., Moore, S. C., Mukundan, H., Nelson, M. A., Ross, D. J., Wagner, G. L., Connor, E. G., Coombs, K. E. & Werner, J. H.
10/1/20 → 09/30/23
Project: Other
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Infiltrating the Epigenetic Code: Identifying 3-Dimensional Chromosome Signatures of Viral Infection
Hovde, B., Chaudhury, S. N., Venu, V., Sanbonmatsu, K. Y., Steadman, C. R., Lappala, A., Lee, J., Prajapati, J. D. & Watt, J. D.
10/1/20 → 09/30/23
Project: Other
Press/Media
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Improving data quality of algal genomics
Erik Richard Hanschen,, Blake Hovde, & Shawn Robert Starkenburg,
03/1/21
1 item of Media coverage
Press/Media: STE Highlight
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Sequence and transcriptome analysis of microalga reveal potential applications
Shawn Robert Starkenburg,, Ramesh Jha,, Blake Hovde,, Chloe R. Deodato, Heather M. Hunsperger, Scott A. Ryken, Will Yost, Johnathan Patterson, Raymond J. Monnat, Rose A. Cattolico & Steven B. Barlow
12/23/15
1 item of Media coverage
Press/Media: STE Highlight